Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015874397.1_cds_XP_016435475.1_31432
CDS Infomation

[gene=LOC107761727] [db_xref=GeneID:107761727] [protein=pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like isoform X2] [protein_id=XP_016435475.1] [location=complement(join(35405..35588,35712..35846,35991..36190,36406..36634,37279..37464,38207..38367,39427..39621,39703..39844,40093..40309,41645..41725,42277..42323,42451..42527))] [gbkey=CDS]
Sequence

ATGCCAGGCGCTAATAATTTTTCAAGAAACAGTTATCTCCATCACCCTAACCAAACAAAA
GGGGAATTTTTTGCCAGGAAGCAAAAGATTGAGCAACGGAGAAAAAAATTACCAATTGCT
GCAGTTGAAAGGAGACTAGTGGAGGAGGTGCGGAACAATGACACTCTGATAATTGTTGGA
GAAACTGGAAGTGGAAAGACAACTCAAATACCTCAGTATCTTTTTAAAGGGGGATTTTGC
CGTGATGGTGGTATCATTGGGATAACTCAACCTAGACGTGTGGCTGCTATTACTGTTGCT
AAACGTGTTTCTGAAGAATGTGGAGTTCCGTTGGGACAAAAAGTTGGATATGCTATTAGA
TTTGAAGATGTAACTTCTGGCCTAACAAAGATCAAATATATGACAGATGGTTTGCTTCTA
AGGGAAGCATTATTGGATCCATACCTCTCCAAGTATTCTGTTATTATTGTTGATGAGGCG
CACGAGCGAACTATCCACACTGATGTATTGCTTGGCTTGTTAAAGAATGTACAGAAAGCA
AGGTCAAAGGGTATCAACGAAGTGCCAGGTCAAGCGAAAAAGTATAACCCATTGAAATTG
ATCATCATGTCAGCTAGTCTGGATGCACGAGTTTTCTCAGAGTACTTTGGTGGTGCAAGA
GCTGTTCATGTTCAGGGACGGCAGTTTCCTGTCGATATATTCTATACCCATAAGCCTGAG
ACAGATTGCATAGATGCAGCTTTGATTACTATATTTCAGGTGATACTGGCAACAAATATT
GCTGAGACATCGGTGACAATACCTGGAATTAAGTATGTTGTTGATCCCGGATTGGTGAAA
GCACGAACTTATGATCCTAAGATGGGAGTTGATTCATTGATCATTGTCACAACATCTAAA
GCTCAAGCTCTGCAAAGGAGTGGACGTGCAGGACGTGAAGGACCTGGGAAATGCTATCGC
CTCTATCAAGAAAGTTTCTTTGAGAAACTCACAGATTCTACATTACCGGAGATTAAGAGA
TGTGATCTCTCGAATGTTGTATTGCAGCTTAAAGCTCTAGGCATTGATGATGTCATTAAT
TTTGACTTCATCGAAAAACCAGACAGGACTGCGATAGTCAACTCACTGTGGTCTCTCTAC
TTGTTGGGTGCTGTAACAGAAGAGAATAAACTTTCAGATGTTGGATATCAAATGGCCAAG
CTACCCCTTGATCCAGTCTATTCTAAGGCTCTCATTGTTGCTAGCCAATTTGGCTGCTTG
AAAGAAATGTTGATCTGTGTTGCAATGCTTTCAGTCGAATCTATTTTCTATGCTCCACGT
GAAAAGTTGGAAGAGTCACGAAATGCGTTGAAAAGCTTTGCAAGTCCGGACGGGGATCAT
TTGACTTTGCTTAATGTATACCGCGCTGCTGATGAGTTCTTTCAGAAGAACAAGATGGTA
AATAGTGAAGAAAAGGCTGAAAAGAGTCTTAGAAAATGGTGCAAGGATAATTATATTAAC
AGCCGCTCTCTAAAACACGCTCGTGATATCCACAGTCAAATTCTGAGGAATGTAGAACAA
ATGGGTCTTCGTGTCACTTCTTGTGAAGACGATATGCTCCTCTTCCGTAGATGCCTTGCT
GCTTCGTTTTTCCTTAAAGCAGCTATGAAGCAGCCTGATGGTGTATACAGGGTCACATTA
AGTGGTTTGATAGTGCAAATACACCCGTCTTCTGTCTTGTTCCGAGCCAAGCCAGAGTGT
ATAATTTTTAATGAATTAGTCCATACTAATCATAGTTATGTCCGTAATGTTTCTAGAATC
GATTACTTGTGGCTAGTTGAGCTGGCTCCTCACTTGTATGCCTTGCAAGACTAA

Peptide Sequence

PEP ID

XP_016435475.1
PEP Infomation

PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like isoform X2 [Nicotiana tabacum]
Sequence

MPGANNFSRNSYLHHPNQTKGEFFARKQKIEQRRKKLPIAAVERRLVEEVRNNDTLIIVG
ETGSGKTTQIPQYLFKGGFCRDGGIIGITQPRRVAAITVAKRVSEECGVPLGQKVGYAIR
FEDVTSGLTKIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTIHTDVLLGLLKNVQKA
RSKGINEVPGQAKKYNPLKLIIMSASLDARVFSEYFGGARAVHVQGRQFPVDIFYTHKPE
TDCIDAALITIFQVILATNIAETSVTIPGIKYVVDPGLVKARTYDPKMGVDSLIIVTTSK
AQALQRSGRAGREGPGKCYRLYQESFFEKLTDSTLPEIKRCDLSNVVLQLKALGIDDVIN
FDFIEKPDRTAIVNSLWSLYLLGAVTEENKLSDVGYQMAKLPLDPVYSKALIVASQFGCL
KEMLICVAMLSVESIFYAPREKLEESRNALKSFASPDGDHLTLLNVYRAADEFFQKNKMV
NSEEKAEKSLRKWCKDNYINSRSLKHARDIHSQILRNVEQMGLRVTSCEDDMLLFRRCLA
ASFFLKAAMKQPDGVYRVTLSGLIVQIHPSSVLFRAKPECIIFNELVHTNHSYVRNVSRI
DYLWLVELAPHLYALQD

Transcript Sequence

Gene sequence data has not been registered.